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Comment: DiffBind can't find a DAR
by
ATpoint
★
4.8k
"My cake does not look as advertised in the recipe", with this sloppy sentence I hope you understand that you need to give people details, …
Comment: DESeq - help with pair wise comparisons
by
bd2000
▴
30
Follow up question, is this the correct way to extract results?
```r
results <- results(ddsObj, list(c("GroupControl.Followup", "GroupTrea…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
ktz
•
0
Thank you for your reply! I would love to know your thoughts on the plots I've included above.
> 'Are the differences between groups lar…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
ktz
•
0
I also realised that the other gene I pointed out that was flagged as DE but had similar count differences also shows that rep1 is lower th…
Comment: DESeq - help with pair wise comparisons
by
bd2000
▴
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Thanks that's great!! I've followed the instructions from the link you sent, is my code correct? By correct I mean, is my code comparing fo…
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