Bioconductor DNA Methylation

Showing : DNA Methylation • reset

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1.2k

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minfi cell proportion estimateCellCounts DNA Methylation

5.1 years ago grayapply2009 • 0

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2.7k

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normalization DNA methylation WGCNA

updated 5.9 years ago by Peter Langfelder ★ 3.0k • written 5.9 years ago by enora.fremy • 0

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1.2k

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medips medip-seq dna methylation dmr analysis

updated 6.4 years ago by Lukas Chavez ▴ 570 • written 6.4 years ago by mtefit • 0

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2.0k

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R gdc rna-seq dna methylation

updated 6.5 years ago by Sean Davis 21k • written 6.5 years ago by RichardJActon ▴ 50

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1.7k

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minfi normalization outliers dna methylation densityplot

6.8 years ago peter.fransquet • 0

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939

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differential variability dna methylation iEVORA DVP

7.0 years ago poojitha.stemcell ▴ 10

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1.2k

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rnbeads methylation methylationepic dna methylation

7.2 years ago gabrielrfries • 0

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1.3k

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dna methylation biseq

updated 7.3 years ago by Gordon Smyth 52k • written 7.3 years ago by ahmad.moousavi • 0

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2.3k

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tcgabiolinks dna methylation

updated 7.4 years ago by Marcel Ramos 700 • written 7.4 years ago by michaelwxf2012 • 0

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2.2k

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dna methylation illimina 450k methylation beta M significance

updated 7.6 years ago by James W. MacDonald 68k • written 7.6 years ago by skids121 • 0

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1.5k

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CNV minfi preprocessing dna methylation

8.1 years ago Thomas • 0

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1.2k

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microarray HM450 dna methylation cohcap

updated 8.3 years ago by James W. MacDonald 68k • written 8.3 years ago by poojitha.stemcell ▴ 10

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1.4k

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minfi bumphunter DNA methylation illumina450k

updated 8.9 years ago by James W. MacDonald 68k • written 8.9 years ago by fleur_p90 • 0

13 results • Page 1 of 1

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Comment: Module membership vs gene significance result and Modules-trait relationships re by Vinaya • 0

Hi. I am having the same issue, and haven't found a solution still.

Comment: Feature Counts - potential bug with outfile.jcounts by Tom • 0

[Penistone Locksmith][1] I think that would be a great idea; a novel junction to annotated junction proximity output column. So if the nove…

Comment: Filtering after DESeq by caroline.zanchi • 0

I am going to try this right now, thanks !

Comment: Bioconductor 3.20 Release Schedule by randyprice13102000 • 0

This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/

Comment: Filtering after DESeq by ATpoint ★ 4.8k

The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …

Votes

Answer: CluserProfiler message "No gene can be mapped"

A: Minfi issue: return code from pthread_create() is 22

Comment: Filtering after DESeq

Answer: DiffBind; Error: No sites have activity greater than filter value

DiffBind; Error: No sites have activity greater than filter value

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